Tuesday, December 22, 2020 From rOpenSci (https://ropensci.org/blog/2020/12/22/phonfieldwork-phonetic-fieldwork-and-experiments/). Except where otherwise noted, content on this site is licensed under the CC-BY license.
As a field linguist, I have spent a lot of time working in villages in the Caucasus, collecting audio from speakers of indigenous languages. The processing of such data involves a lot of time-consuming tasks, so during my field trips I created my own pipeline for data collection. I wrote a number of scripts using different programming languages for automatic renaming, merging, and preannotation of files, making backups, visualizing some data, etc. My method consisted of a combination of solutions developed on the fly to solve specific, independent tasks, without thinking of the future.
This became a problem when I wanted to pass on my knowledge to my students. Not all of them were familiar with all of the programming languages I used, some of the code had become outdated, and some code did not work properly on all operating systems.
The practical side of linguistic research is often neglected. Linguists rely on manual and makeshift solutions for working with data and simultaneously write similar scripts, reinventing the same wheel as part of the process. The few existing software programs are undercited: there are a lot of papers presenting data processed in R,1 Praat,2 ELAN3 or other software, which do not cite them. Methodologically oriented papers are valued mainly for their theoretical implications.
Recent years have seen increased attention to best practices in linguistic data management, for example through the introduction of Cross-Linguistic Data Formats.4 I think the time is also ripe to pay more attention to what I like to call science craft – improving the methods for curating linguistic data, and allowing future generations of linguists to benefit from our experience.
That is why I decided to create a toolkit for phonetic researchers in the form of an R package, phonfieldwork: it is written using one programming language, and easy to use for non-coders and people who are not familiar with R.
Below is an overview of its main functions.
Most phonetic research consists of the following steps:
The phonfieldwork package is created for helping with items 3, 5, and 8, and partially 4. If you are interested in the whole pipeline please read the whole Get started section in the package documentation. Below I will introduce some specific features.
First let’s load the package:
It is easier to collect your stimuli with a presentation. In order to create it you need a list of stimuli (as an example I will use a simple vector, but of course it can be a column from
create_presentation(stimuli = c("tip", "tap", "top"), output_file = "first_example", output_dir = "...path/to/your/folder")
There was a goal to be able to convert multiple sound annotation formats into data.frame format, so you can find a whole bunch of functions that serve this purpose:
textgrid_to_df(system.file("extdata", "test.TextGrid", package = "phonfieldwork"))
id time_start time_end content tier tier_name source 1 1 0.00000000 0.01246583 1 intervals test.TextGrid 6 1 0.00000000 0.01246583 2 empty_intervals test.TextGrid 2 2 0.01246583 0.24781914 t 1 intervals test.TextGrid 7 2 0.01246583 0.24781914 2 empty_intervals test.TextGrid 11 1 0.01246583 0.01246583 t 3 points test.TextGrid 3 3 0.24781914 0.39552363 e 1 intervals test.TextGrid 8 3 0.24781914 0.39552363 2 empty_intervals test.TextGrid 12 2 0.24781914 0.24781914 e 3 points test.TextGrid 4 4 0.39552363 0.51157715 s 1 intervals test.TextGrid 9 4 0.39552363 0.51157715 2 empty_intervals test.TextGrid 13 3 0.39552363 0.39552363 s 3 points test.TextGrid 5 5 0.51157715 0.65267574 t 1 intervals test.TextGrid 10 5 0.51157715 0.65267574 2 empty_intervals test.TextGrid 14 4 0.51157715 0.51157715 t 3 points test.TextGrid
.eaffiles; see also the FRelan package by Niko Partanen
eaf_to_df(system.file("extdata", "test.eaf", package = "phonfieldwork"))
tier id content tier_name tier_type time_start time_end source 9 1 1 intervals praat 0.000 0.012 test.eaf 10 2 1 empty_intervals praat 0.000 0.012 test.eaf 11 1 2 t intervals praat 0.012 0.248 test.eaf 12 2 2 C empty_intervals praat 0.012 0.248 test.eaf 1 1 3 e intervals praat 0.248 0.396 test.eaf 2 2 3 V empty_intervals praat 0.248 0.396 test.eaf 3 1 4 s intervals praat 0.396 0.512 test.eaf 4 2 4 C empty_intervals praat 0.396 0.512 test.eaf 5 1 5 t intervals praat 0.512 0.652 test.eaf 6 2 5 C empty_intervals praat 0.512 0.652 test.eaf 7 1 6 intervals praat 0.652 300.000 test.eaf 8 2 6 empty_intervals praat 0.652 300.000 test.eaf
exb_to_df(system.file("extdata", "test.exb", package = "phonfieldwork"))
tier id content tier_name tier_type tier_category tier_speaker time_start 3 1 1 t X [v] t v SPK0 0.06908955 1 1 2 e X [v] t v SPK0 0.24989836 5 1 3 s X [v] t v SPK0 0.38072750 7 1 4 t X [v] t v SPK0 0.40424735 4 2 1 C X [v] a v SPK0 0.06908955 2 2 2 V X [v] a v SPK0 0.24989836 6 2 3 C X [v] a v SPK0 0.38072750 8 2 4 C X [v] a v SPK0 0.40424735 time_end source 3 0.2498984 test.exb 1 0.3807275 test.exb 5 0.4042473 test.exb 7 0.6526757 test.exb 4 0.2498984 test.exb 2 0.3807275 test.exb 6 0.4042473 test.exb 8 0.6526757 test.exb
srt_to_df(system.file("extdata", "test.srt", package = "phonfieldwork"))
id content time_start time_end source 0 1 t 0.013 0.248 test.srt 1 2 e 0.248 0.396 test.srt 2 3 s 0.396 0.512 test.srt 3 4 t 0.512 0.653 test.srt
audacity_to_df(system.file("extdata", "test_audacity.txt", package = "phonfieldwork"))
time_start time_end content source 1 0.2319977 0.3953891 sssw test_audacity.txt
There is also an option to work with
.flextext files from FLEx, but since this is not relevant for phonetics, I will skip this part.
The sound annotation process takes a lot of time and in most cases it is really boring. Because of this boredom annotators make mistakes during the annotation process. In order to prevent it phonfieldwork provides a bunch of functions that preannotate your sound files (
create_empty_textgrid()). A detailed example would be too large to put in a blog post (you can find it in the documentation). Here is a
.gif (created with magick) that illustrates the whole process:
As you can see, it is possible to create all the annotations in advance and leave the annotators with one task only: to move boundaries.
Sound visualization is a common task that could be solved via different programs and R packages, but it can also be done with phonfieldwork:
file <- system.file("extdata", "test.wav", package = "phonfieldwork") draw_sound(file)
A feature specific to phonfieldwork, is that it is possible to zoom in to some part of the sound with a spectrogram (time in the
zoom argument is represented in seconds):
draw_sound(file, zoom = c(0.2, 0.4))
It is also possible to visualize any sound annotation format that was converted to dataframe:
our_textgrid <- system.file("extdata", "test.TextGrid", package = "phonfieldwork") draw_sound(file, annotation = textgrid_to_df(our_textgrid))
If you have folders with small sound chunks and their visualizations it is possible to create a sound viewer like this. This is done using the
create_viewer(audio_dir = ".../sounds/", # path to folder with sounds picture_dir = ".../pictures/", # path to folder with pictures table = df, # dataframe with additional information output_dir = "...", # where to store the result? output_file = "...") # how to name the result file?
If you are familiar with my package lingtypology7 for interactive linguistic map generation and API for typological databases, there is good news for you: it is possible to connect the two packages, creating an interactive map that shares the same hear and view buttons. Here is an example.
I really hope that this format will become a new tool for searching, analyzing and sharing phonetic data. However, there is always a risk that this tool can be misused, so please read the text about Ethical Research with phonfieldwork.
It is only a brief introduction into the phonfieldwork functionality, for more details read the whole Get started section in the package documentation.
I would like to thank
Brugman, Hennie, Albert Russel, and Xd Nijmegen. 2004. “Annotating Multi-Media/Multi-Modal Resources with ELAN.” In LREC. ↩︎
Forkel, Robert, Johann-Mattis List, Simon J. Greenhill, Christoph Rzymski, Sebastian Bank, Harald Hammarström, Martin Haspelmath, and Russell D. Gray. 2018. “Cross-Linguistic Data Formats, Advancing Data Sharing and Re-Use in Comparative Linguistics.” Sci Data 5 (1): 1–10. ↩︎
It will not look nice on a phone, but you can use it on a PC or a tablet. ↩︎
Just change the
system.file() function to the path to the file. ↩︎