rOpenSci | Package Citations

Package Citations

We used to manually curate a dataset of all citations of our packages. Find below a regularly updated random sample as well as a searchable table of all citations.

If you use one of our packages, please cite it. E.g. if you use the magick package, run citation("magick") in your R console to find the appropriate text.

TitleYearAuthorsJournalPackage
Spatial Gaps in Global Biodiversity Information and the Role of Citizen Science2016Amano et al.BioSciencergbif
A botanical inventory of forest on karstic limestone and metamorphic substrate in the Chiquibul Forest, Belize, with focus on woody taxa2015Baden et al.Edinburgh Journal of Botanytaxize
Biodiversity ensures plant-pollinator phenological synchrony against climate change2013Bartomeus et al.Ecol Lettrgbif
Discovering and developing primary biodiversity data from social networking sites: A novel approach2014BarveEcological Informaticsrgbif
Retrieving taxa names from large biodiversity data collections using a flexible matching workflow2015Vanden Berghe et al.Ecological Informaticstaxize
TR8: an R package for easily retrieving plant species traits2015BocciMethods in Ecology and Evolutiontaxize
A macro-ecological perspective on crassulacean acid metabolism (CAM) photosynthesis evolution in Afro-Madagascan drylands: Eulophiinae orchids as a case study2015Bone et al.New Phytolrgbif
Near real time weather and ocean model data access with rNOMADS2015Bowman & LeesComputers & Geosciencesrnoaa
Beyond species-specific assessments: an analysis and validation of environmental distance metrics for non-indigenous species risk assessment2015Bradie et al.Biological Invasionstaxize
A preliminary inventory of the catfishes of the lower Rio Nhamundá, Brazil (Ostariophysi, Siluriformes2015Collins et al.Biodiversity Data Journalrgbif
Co-extinction in a host-parasite network: identifying key hosts for network stability2015Dallas & CorneliusScientific ReportshelminthR
The changing patterns of plant naturalization in Australia2015Dodd et al.Diversity Distribtaxize
R for all (I): Introduction to the new age of biological analyses2013Drozd & ŠipošCasopis Slezskeho Zemskeho Muzea Argbif, rdryad, rfisheries, RMendeley, treeBASE, rfishbase, taxize, rsnsps, rvertnet, rentrez
Synthesis and comparative analysis of physiological tolerance and life-history growth traits of marine aquaculture species2016Froehlich et al.Aquaculturerfishbase
taxize: taxonomic search and retrieval in R2013Chamberlain & SzöcsF1000Researchtaxize
Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa2015Hodgins et al.Mol Ecoltaxize
SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records2015Kong et al.PLoS ONErgbif
Data integration in biological research: an overview2015Lapatas et al.J of Biol Res-Thessalonikitaxize
A pharyngeal jaw evolutionary innovation facilitated extinction in Lake Victoria cichlids2015McGee et al.Sciencerfishbase
camtrapR: an R package for efficient camera trap data management2016Niedballa et al.Methods in Ecology and Evolutiontaxize
NoSQL Data Model for Semi-automatic Integration of Ethnomedicinal Plant Data from Multiple Sources2014Ningthoujam et al.Phytochemical Analysistaxize
Dataset of Passerine bird communities in a Mediterranean high mountain (Sierra Nevada, Spain2016Pérez-Luque et al.ZKtaxize
Evolutionarily Stable Strategies for Fecundity and Swimming Speed of Fish2016Plank et al.Bull Math Biolrfishbase
Best publishing practices to improve user confidence in scientific software2015PoisotIEEtaxize
Are all species necessary to reveal ecologically important patterns?2014Pos et al.Ecology and Evolutiontaxize
How predation shaped fish: the impact of fin spines on body form evolution across teleosts2015Price et al.Proc. R. Soc. Brfishbase
Australian acacias as invasive species: lessons to be learnt from regions with long planting histories2015Richardson et al.Southern Forests: a Journal of Forest Sciencergbif
Non-native species modify the isotopic structure of freshwater fish communities across the globe2015Sagouis et al.Ecographyrfishbase
Adaptive plasticity and niche expansion in an invasive thistle2015Turner et al.Ecology and Evolutionrgbif
paleobioDB: an R package for downloading, visualizing and processing data from the Paleobiology Database2014Varela et al.EcographypaleobioDB
Variation in trait trade-offs allows differentiation among predefined plant functional types: implications for predictive ecology2015Verheijen et al.New Phytolrgbif
speciesgeocodeR: An R package for linking species occurrences, user-defined regions and phylogenetic trees for biogeography, ecology and evolution2015Zizka & AntonelliCold Spring Harbor Laboratoryrgbif
Long-lasting effects of land use history on soil fungal communities in second-growth tropical rain forests2016Bachelot et al.Ecol Appltaxize
Tracking the history of an invasion: the freshwater croakers (Teleostei: Sciaenidae) in South America2014Boeger et al.Zool Scrrfishbase
Prestoration: using species in restoration that will persist now and into the future2016Butterfield et al.Restoration Ecologyrgbif
Niche dynamics of alien species do not differ among sexual and apomictic flowering plants2015Dellinger et al.New Phytolrgbif
Late Quaternary vegetation dynamics from central parts of the Madeira River in Brazil2015Feitosa et al.Acta Botanica Brasilicargbif
Climatological correlates of seed size in Amazonian forest trees2015Malhado et al.Journal of Vegetation Sciencergbif
A trait-based metric sheds new light on the nature of the body size-depth relationship in the deep sea2016Mindel et al.J Anim Ecolrfishbase
Evolutionary Origin of the Scombridae (Tunas and Mackerels): Members of a Paleogene Adaptive Radiation with 14 Other Pelagic Fish Families2013Miya et al.PLoS ONErfishbase
Dataset of Phenology of Mediterranean high-mountain meadows flora (Sierra Nevada, Spain2015Pérez-Luque et al.PhytoKeystaxize
Synthetic datasets and community tools for the rapid testing of ecological hypotheses2015Poisot et al.Ecographytaxize
Phylogenetic insights into the history and diversification of fishes on reefs2015Price et al.Coral Reefsrfishbase
geoknife: reproducible web-processing of large gridded datasets2015Read et al.Ecographyropensci, paleobioDB
Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests2016Wagner et al.Biogeosciencestaxize
Evolutionary signals of symbiotic persistence in the legume–rhizobia mutualism2015Werner et al.Proc Natl Acad Sci USArgbif
Biogeo: an R package for assessing and improving data quality of occurrence record datasets2016Robertson et al.Ecographyrgbif
Phylogenetic systematics of leaffishes - Teleostei: Polycentridae, Nandidae2015Collins et al.Journal of Zoological Systematics and Evolutionary Researchrfishbase
Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism2015Davison et al.Sciencergbif
Pollen assemblage richness does not reflect regional plant species richness: a cautionary tale2013Goring et al.Journal of Ecologyritis
Dynamics of Near-Coastal Fish Assemblages following the Deepwater Horizon Oil Spill in the Northern Gulf of Mexico2015Schaefer et al.Transactions of the American Fisheries Societyrfishbase
MonoPhy : a simple R package to find and visualize monophyly issues2016Schwery & O’MearaPeerJ Computer Sciencetaxize
A quantitative synthesis of the importance of variables used in MaxEnt species distribution models2016Bradie & LeungJournal of Biogeographytaxize
Taxonomic similarity, more than contact opportunity, explains novel plant-pathogen associations between native and alien taxa2016Bufford et al.New Phytoltaxize
Semi-Automated Identification of Ontological Labels in the Biomedical Literature with goldi2016Cole et al.Cold Spring Harbor Laboratorypdftools
Measures of biologically relevant environmental heterogeneity improve prediction of regional plant species richness2016Cramer & VerboomJournal of Biogeographytaxize
Plant Distribution Data Show Broader Climatic Limits than Expert-Based Climatic Tolerance Estimates2016Curtis & BradleyPLOS ONErgbif
Climate change will increase the naturalization risk from garden plants in Europe2016Dullinger et al.Global Ecolrgbif
MetacodeR: An R package for manipulation and heat tree visualization of community taxonomic data from metabarcoding2016Foster et al.Cold Spring Harbor Laboratorytaxize
Is citizen science an open science in the case of biodiversity observations?2016Groom et al.Journal of Applied Ecologyrgbif
Using evolutionary tools to search for novel psychoactive plants2016Halse-Gramkow et al.Plant Genetic Resourcestaxize
Climate Warming and Seasonal Precipitation Change Interact to Limit Species Distribution Shifts across Western North America2016Harsch & HilleRisLambersPLOS ONEgeonames
A study of institutional spending on open access publication fees in Germany2016Jahn & TullneyPeerJrcrossref
Evolutionary dynamics and biogeography of Musaceae reveal a correlation between the diversification of the banana family and the geological and climatic history of Southeast Asia2016Janssens et al.New Phytolrgbif
Using the Crossref Metadata API to explore publisher content2016LammeySci Edrcrossref, ropensci
Positive biodiversity-productivity relationship predominant in global forests2016Liang et al.Sciencetaxize
The Propensity to Cycle Tool: An open source online system for sustainable transport planning2015Lovelace et al.arXivstplanr
rotl: an R package to interact with the Open Tree of Life data2016Michonneau et al.Methods in Ecology and Evolutionrotl, traits
Growth rings in tropical trees: role of functional traits, environment, and phylogeny2016Nath et al.Treestaxize
Open Source Molecular Modeling2016Pirhadi et al.Journal of Molecular Graphics and Modellingwebchem
Adaptive evolution of seed oil content in angiosperms: accounting for the global patterns of seed oils2016Sanyal & DecocqBMC Evolutionary Biologyrgbif
Genome size variation and species diversity in salamander families2016Sclavi & HerrickCold Spring Harbor Laboratorytaxize
Ciência Política na era do Big Data: automação na coleta de dados digitais2015Silva & MeirelesPolitica HojeRSelenium
Waking the undead: implications of a soft explosive model for the timing of placental mammal diversification2016Springer et al.Molecular Phylogenetics and EvolutionpaleobioDB
CARMA revisited: an updated database of carbon dioxide emissions from power plants worldwide2012UmmelCenter for Global Development Working Papergeonames
Light enough to travel or wise enough to stay? Brain size evolution and migratory behaviour in birds2016VinczeEvolutiontaxize
A review of software tools for spell-checking taxon names in vegetation databases2016WagnerJournal of Vegetation Sciencetaxize
Foliar nectar enhances plant–mite mutualisms: the effect of leaf sugar on the control of powdery mildew by domatia-inhabiting mites2016Weber et al.Annals of Botanytaxize
Achievements and challenges in the integration, reuse and synthesis of vegetation plot data2016WiserJournal of Vegetation Sciencetaxize
BETYdb: a yield, trait, and ecosystem service database applied to second‐generation bioenergy feedstock production2017LeBauer et al.GCB Bioenergytraits
RAINBIO: a mega-database of tropical African vascular plants distributions2016Gilles et al.PhytoKeysrgbif
Despite phylogenetic effects, C3-C4 lineages bridge the ecological gap to C4 photosynthesis2016Lundgren & ChristinJournal of Experimental Botanyrgbif
Comparing genome versus proteome-based identification of clinical bacterial isolates2016Galata et al.Briefings in Bioinformaticstaxize
Phenological shifts in hoverflies (Diptera: Syrphidae): linking measurement and mechanism2016Hassall et al.Ecographybold
The Tao of open science for ecology2015Hampton et al.Ecosphererentrez
Integrative Computational and Experimental Approaches to Establish a Post-Myocardial Infarction Knowledge Map2014Nguyen et al.PLoS Computational Biologyrentrez
Do method and species lifestyle affect measures of maximum metabolic rate in fishes?2016Killen et al.Journal of Fish Biologyrotl
Species interactions in occurrence data for a community of tick-transmitted pathogens2016Estrada-Peña & FuenteScientific Datarotl
The Quality of Citations: Towards Quantifying Qualitative Impact in Social Science Research2016Bauer et al.SSRNfulltext, rcrossref
Environmental Correlation Analysis for Genes Associated with Protection against Malaria2016Mackinnon et al.Molecular Biology and Evolutionrsnps
Visualizing GeoData with R2016KolbAustrian Journal of Statisticsgeonames
CARMA Revisited: An Updated Database of Carbon Dioxide Emissions from Power Plants Worldwide2012UmmelCGD Working Papergeonames
Elevation alters ecosystem properties across temperate treelines globally2017Mayor et al.Naturebrranching
BIOMASS: An R Package for estimating aboveground biomass and its uncertainty in tropical forests2017Réjou-Méchain et al.Methods in Ecology and Evolutiontaxize
Modelling the effects of environmental conditions on the acoustic occurrence and behaviour of Antarctic blue whales2017Shabangu et al.PLOS ONErerddap
Fish diversity in tidepools: assembling effects of environmental heterogeneity2017Bezerra et al.Environmental Biology of Fishesrfishbase
Spatial distribution of environmental DNA in a nearshore marine habitat2017O’Donnell et al.PeerJtaxize
Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens2017Mohiuddin et al.Water Researchtaxize
Single locus genotyping to track Leishmania donovani in the Indian subcontinent: Application in Nepal2017Rai et al.PLOS Neglected Tropical Diseasesrgbif
Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding2017Andruszkiewicz et al.PLOS ONEtaxize
Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima2017Balao et al.Molecular Ecologyrgbif
red - an R package to facilitate species red list assessments according to the IUCN criteria2017CardosoBiodiversity Data Journalrredlist
Habitat filtering not dispersal limitation shapes oceanic island floras: species assembly of the Galápagos archipelago2017Carvajal-Endara et al.Ecology Lettersrgbif
Ex situ conservation of plant diversity in the world’s botanic gardens2017Mounce et al.Nature Plantsrgbif
Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data2017Olson et al.PeerJtaxize
The role of trait combination in the conspicuousness of fruit display among bird-dispersed plants2017Ordano et al.Functional Ecologytaxize
Aligning marine species range data to better serve science and conservation2017O’Hara et al.PLOS ONEworrms
The National Eutrophication Survey: lake characteristics and historical nutrient concentrations2017Stachelek et al.Earth System Science Data Discussionsmagick, tesseract
A global database on freshwater fish species occurrence in drainage basins2017Tedesco et al.Scientific Datarfishbase
Genome size in arthropods: different roles of phylogeny, habitat and life history in insects and crustaceans2017Alfsnes et al.Ecology and Evolutionrgbif, spocc
On the inconsistency of pollinator species traits for predicting either response to land-use change or functional contribution2017Bartomeus et al.Oikostaxize
On the inconsistency of pollinator species traits for predicting either response to agricultural intensification or functional contribution2016Bartomeus et al.Cold Spring Harbor Laboratorytaxize
R Python, and Ruby clients for GBIF species occurrence data2017Chamberlain & BoettigerPeerJ Preprintsrgbif
The Spine of American Law: Digital Text Analysis and US Legal Practice2017Funk & MullenThe American Historical Reviewtextreuse
Using the 'rentrez' R Package to Identify Repository Records for NCBI LinkOut1279Lee et al.Code4lib Journalrentrez, ropensci
A quantitative-PCR based method to estimate ranavirus viral load following normalisation by reference to an ultraconserved vertebrate target2017Leung et al.Journal of Virological Methodstaxize
A quantitative and statistical biological comparison of three semi-enclosed seas2017Ludt et al.Marine Biodiversityrgbif
Taxonomic bias in animal behaviour publications2017Rosenthal et al.Animal Behaviourtaxize
Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity2017Reznik et al.Cell Reportstaxize
Tracking Invasive Alien Species (TrIAS): Building a data-driven framework to inform policy2017Vanderhoeven et al.Research Ideas and Outcomesrgbif, spocc
A distribution and taxonomic reference dataset of Geranium in the New World2017Aedo & PandoScientific Datargbif
Amazon plant diversity revealed by a taxonomically verified species list2017Cardoso et al.Proceedings of the National Academy of Sciencesrgbif
Barriers to globally invasive species are weakening across the Antarctic2017Duffy et al.Diversity and Distributionsrgbif
Trait shifts associated with the subshrub life-history strategy in a tropical savanna2017Giroldo et al.Oecologiabrranching
Environmental correlates of biome-level floristic turnover in South Africa2017Power et al.Journal of Biogeographytaxize
Quantifying the influence of urban land use on mangrove biology and ecology: A meta-analysis2017BranoffGlobal Ecology and Biogeographytaxize
The Future Species of Anthropocene Seas2017Dulvy & KindsvaterConservation for the Anthropocene Oceanrfishbase
Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles2017Pereira et al.Molecular Phylogenetics and Evolutionrgbif
A new species of Telipogon (Oncidiinae: Orchidaceae) from the paramos of Colombia2017Pérez-Escobar et al.Phytotaxaspocc
Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots2017Zenil-Ferguson et al.Evolutionchromer
GSODR: Global Summary Daily Weather Data in R2017Sparks et al.The Journal of Open Source SoftwareGSODR
Signatures of the collapse and incipient recovery of an overexploited marine ecosystem2017Pedersen et al.Royal Society Open Sciencerfishbase
Evaluating two freely available geocoding tools for geographical inconsistencies and geocoding errors2017SinghOpen Geospatial Data, Software and StandardshelminthR
rentrez: An R package for the NCBI eUtils API (Version 12017WinterPeerJ Preprintsrentrez
Distribution and diversity of enzymes for polysaccharide degradation in fungi2017BerlemontScientific Reportstaxize
Species are not most abundant in the centre of their geographic range or climatic niche2017Dallas et al.Ecology Lettersspocc, taxize
Cophylogenetic signal is detectable in pollination interactions across ecological scales2017Hutchinson et al.Ecologytaxize
Pathogenic helminths in the past: Much ado about nothing2017MulderF1000ResearchhelminthR
Integrating lipid storage into general representations of fish energetics2017Martin et al.Journal of Animal Ecologyrfishbase
Naturalization of ornamental plant species in public green spaces and private gardens2017Mayer et al.Biological Invasionsrgbif
Skull shape reflects prey size niche in toothed whales2017McCurry et al.Biological Journal of the Linnean Societyrfishbase
Geographical variation in the foraging behaviour of the pantropical red-footed booby2017Mendez et al.Marine Ecology Progress Seriesrerddap
Species pool distributions along functional trade-offs shape plant productivity–diversity relationships2017Chalmandrier et al.Scientific Reportsrgbif, taxize
Repetitive prefix in Agul: Morphological copy from a closely related language2017MaisakInternational Journal of Bilingualismlingtypology
Cophylogenetic assessment of New World warblers (Parulidae) and their symbiotic feather mites (Proctophyllodidae2017Matthews et al.Journal of Avian Biologyrotl
High dimensional Single Index Bayesian Modeling of the Brain Atrophy over time2017Roy et al.arXivrsnps
2017Drost et al.Bioinformaticsbiomartr, taxize
Tree seedling vitality improves with functional diversity in a Mediterranean common garden experiment2018Peer et al.Forest Ecology and Managementbrranching
tidyhydat: Extract and Tidy Canadian Hydrometric Data2017AlbersThe Journal of Open Source Softwaretidyhydat
Varieties of Melampyrum Lineare (Orobanchaceae) Revisited2017Oldham & WeeksRhodoraspocc
PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures2018Krawczyk et al.Nucleic Acids Researchrentrez
Big data of tree species distributions: how big and how good?2017Serra-Diaz et al.Forest Ecosystemsrgbif
Work Engagement among Rescue Workers: Psychometric Properties of the Portuguese UWES2018Sinval et al.Frontiers in Psychologyskimr
Most species are not limited by an Amazonian river postulated to be a border between endemism areas2018Santorelli et al.Scientific Reportsrotl
Seed-dispersal interactions in fragmented landscapes - a metanetwork approach2018Emer et al.Ecology Letterstaxize
Patterns of microsatellite distribution reflect the evolution of biological complexity2018Surabhi et al.Cold Spring Harbor Laboratorytaxize
Transcriptome profiling of lentil (Lens culinaris) through the first 24 hours of Ascochyta lentis infection reveals key defence response genes2018Khorramdelazad et al.BMC Genomicstaxize
A transcript-wide association study in physical activity intervention implicates molecular pathways in chronic disease2018Claypool & PatelCold Spring Harbor Laboratoryrentrez
Scraping Financial Data from the Web Using R Language2018Krotov & TennysonJournal of Emerging Technologies in Accountingpdftools
SecretSanta: flexible pipelines for functional secretome prediction2018Gogleva et al.Bioinformaticsbiomartr
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal2018Chen et al.Databaserentrez
Link prediction for interdisciplinary collaboration via co-authorship network2018Cho & YuarXivrcrossref
Intraspecific and interspecific adaptive latitudinal cline in Brassicaceae seed oil traits2018Sanyal et al.American Journal of Botanyrgbif
BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology2018Lakiotaki et al.Databaserentrez
New formula and conversion factor to compute tree species basic wood density from a global wood technology database2018Vieilledent et al.Cold Spring Harbor Laboratorytaxize
Taxa: An R package implementing data standards and methods for taxonomic data2018Foster et al.F1000Researchtaxa, taxize
A meta-analysis of birth-origin effects on reproduction in diverse captive environments2018Farquharson et al.Nature Communicationsrotl
Filter-dispersal assembly of lowland Neotropical rainforests across the Andes2018Bemmels et al.Ecographyrgbif, brranching
Systematic Functional Annotation of Somatic Mutations in Cancer2018Ng et al.Cancer Cellbiomartr
GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms2018Bennett et al.Scientific Datataxize
Nomenclature instability in species culturomic assessments: Why synonyms matter2018Correia et al.Ecological Indicatorstaxize
GeneXX: An online tool for the exploration of transcript changes in skeletal muscle associated with exercise2018Reibe et al.Physiological Genomicsrentrez
Brazil-Portugal Transcultural Adaptation of the UWES-9: Internal Consistency, Dimensionality, and Measurement Invariance2018Sinval et al.Frontiers in Psychologyskimr
Development of quantitative screen for 1550 chemicals with GC-MS2018Bergmann et al.Analytical and Bioanalytical Chemistrywebchem
ijtiff: An R package providing TIFF I/O for ImageJ users2018Nolan & Padilla-ParraJournal of Open Source Softwareijtiff
MicroRNA&ndash,mRNA expression profiles associated with medulloblastoma subgroup 42018Gershanov et al.Cancer Management and Researchiheatmapr
Zenodo in the Spotlight of Traditional and New Metrics2017Peters et al.Frontiers in Research Metrics and Analyticsoai
visdat: Visualising Whole Data Frames2017TierneyThe Journal of Open Source Softwarevisdat
Fast, Consistent Tokenization of Natural Language Text2018Mullen et al.Journal of Open Source Softwaretokenizers, textreuse
Niche conservatism and the invasive potential of the wild boar2017Sales et al.Journal of Animal Ecologyspocc
Multivariate skeletal analyses support a taxonomic distinction between New Zealand and Australian Eudyptula penguins (Sphenisciformes: Spheniscidae2017Grosser et al.Emu - Austral Ornithologyrnoaa
Arthropod and oligochaete assemblages from grasslands of the southern Kenai Peninsula, Alaska2017Bowser et al.Biodiversity Data Journalbold
Disparities in second-generation DNA metabarcoding results exposed with accessible and repeatable workflows2018Divoll et al.Molecular Ecology Resourcesbold
Illuminating prey selection in an insectivorous bat community exposed to artificial light at night2017Cravens et al.Journal of Applied Ecologybold
Missing the point: are journals using the ideal number of decimal places?2018BarnettF1000Researchrentrez
Natural history bycatch: a pipeline for identifying metagenomic sequences in RADseq data2018Holmes & Davis RaboskyPeerJtaxize
Quantitative Falsification for Qualitative Findings2018PajoSocial Science Computer Reviewtokenizers
Down-sizing of dung beetle assemblages over the last 53 000 years is consistent with a dominant effect of megafauna losses2018Schweiger & SvenningOikosrgbif
Miniaturisation of biologgers is not alleviating the 5% rule2018Portugal & WhiteMethods in Ecology and Evolutionrotl
Comparative transcriptomics and genomic patterns of discordance in Capsiceae (Solanaceae2018Spalink et al.Molecular Phylogenetics and Evolutionrentrez
Seasonal dynamics of typhoid and paratyphoid fever2018Saad et al.Scientific Reportsrgbif
miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer2018Ahmed et al.BMC Research NotescRegulome
Effects of nettle slurry (Urtica dioica L2018Garmendia et al.PeerJwritexl
Drivers and rates of stock assessments in the United States2018Neubauer et al.PLOS ONErfishbase
A snapshot of translational research funded by the National Institutes of Health (NIH): A case study using behavioral and social science research awards and Clinical and Translational Science Awards funded publications2018Han et al.PLOS ONErentrez
Fish reproductive-energy output increases disproportionately with body size2018Barneche et al.Sciencerotl
Suppdata: Downloading Supplementary Data from Published Manuscripts2018Pearse et al.Journal of Open Source Softwaresuppdata
Refining area of occupancy to address the modifiable areal unit problem in ecology and conservation. Conservation Biology2018Moat et al.Conservation Biologyrredlist
One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon2018Machado et al.Scientific Reportsrentrez
Genomic atlas of the human plasma proteome2018Sun et al.Naturerentrez, plotly
snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions2018Nousiainen et al.BioinformaticsRSelenium
Machine learning techniques for the automation of literature reviews and systematic reviews in EFSA2018Jaspers et al.EFSA Supporting PublicationsaRxiv, rbhl, rcrossref, rdatacite, rplos
Global drivers of reef fish growth2018Morais & BellwoodFish and Fisheriesrotl
A stromal cell population that inhibits adipogenesis in mammalian fat depots2018Schwalie et al.Naturebiomartr
Nature’s untold stories: an overview on the availability and type of on-line data on long-term biodiversity monitoring2018Ondei et al.Biodiversity and Conservationtaxize
Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too “universal”?2018Mioduchowska et al.PLOS ONErentrez
Text Analytics Techniques in the Digital World: a Sentiment Analysis Case Study of the Coverage of Climate Change on US News Networks2018CaseyIrish Communication Reviewtokenizers
Distributional Patterns and Ecological Determinants of Bat Occurrence Inside Caves: A Broad Scale Meta-Analysis2018De Oliveira et al.Diversityrgbif
Abstract 4643: Drug-Target Explorer: An interactive tool for examining chemical-biological interactions2018Allaway et al.Cancer Chemistrywebchem
Restoration Provides Hope for Faunal Recovery: Changes in Primate Abundance Over 45 Years in Kibale National Park, Uganda2018Chapman et al.Tropical Conservation Sciencernaturalearth
Optimizing community trees using the open tree of life increases the reliability of phylogenetic diversity and dispersion indices2018Gastauer et al.Ecological Informaticsrotl, brranching
Distribution and ecological segregation on regional and microgeographic scales of the diploid Centaurea aspera L., the tetraploid C. seridis L., and their triploid hybrids (Compositae2018Garmendia et al.PeerJwritexl
Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum2018Ruiz et al.Nucleic Acids Researchiheatmapr
Allometric and trait-based patterns in parasite stoichiometry2018Paseka & GrunbergOikosrotl
DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis2018Finak et al.Gates Open ResearchDataPackageR
Vulnerability to snakebite envenoming: a global mapping of hotspots2018Longbottom et al.The Lancetspocc
Evolutionary dynamics of host specialization in wood-decay fungi2018Krah et al.BMC Evolutionary Biologyrusda
Fish community and single-species indicators provide evidence of unsustainable practices in a multi-gear reef fishery2018Babcock et al.Fisheries Researchrfishbase
Alcohol Expectancy-Adolescent Questionnaire (AEQ-AB): Validation for portuguese college students2018Almeida et al.Health and Addictions/Salud y Drogasskimr
Locating similar names through locality sensitive hashing and graph theory2018García et al.Multimedia Tools and Applicationstextreuse
Olfactory-cued navigation in shearwaters: linking movement patterns to mechanisms2018Abolaffio et al.Scientific Reportsrerddap
Better late than never: a synthesis of strategic land retirement and restoration in California2018Lortie et al.Ecospherergbif
Challenges to fisheries advice and management due to stock recovery2018Van Gemert & AndersenICES Journal of Marine Sciencerfishbase
Breakdown of brain–body allometry and the encephalization of birds and mammals2018Tsuboi et al.Nature Ecology & Evolutiontaxize
Mapping the potential distributions of etiological agent, vectors, and reservoirs of Japanese Encephalitis in Asia and Australia2018Samy et al.Acta Tropicaspocc
Ecosystem type shapes trophic position and omnivory in fishes2018Sánchez-Hernández & AmundsenFish and Fisheriesrfishbase
Google Scholar, Web of Science, and Scopus: a systematic comparison of citations in 252 subject categories2018Martín-Martín et al.arXivcld2
Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation2018Grenié et al.Biological Conservationtaxize
Barcoding of Chrysomelidae of Euro-Mediterranean area: efficiency and problematic species2018Magoga et al.Scientific Reportsrentrez
Digitally Analyzing the Uneven Ground: Language Borrowing Among Indian Treaties2018CatalanoCurrent Research in Digital Historytextreuse
Modelling the spatial distribution of aquatic insects (Order Hemiptera) potentially involved in the transmission of Mycobacterium ulcerans in Africa2018Cano et al.Parasites & Vectorsopencage
Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations2018Otten et al.EMBO Molecular Medicinerentrez
The effect of large sample sizes on ecological niche models: Analysis using a North American rodent, Peromyscus maniculatus2018Boria & BloisEcological Modellingrgbif
Why are woody plants fleshy-fruited at low elevations? Evidence from a high-elevation oceanic island2018Albert et al.Journal of Vegetation Sciencebrranching
A global assessment of tourism and recreation conservation threats to prioritise interventions2018Lusseau & ManciniarXivrredlist, rgbif
Global environmental drivers of marine fish egg size2018Barneche et al.Global Ecology and Biogeographyrotl
Expanding tidy data principles to facilitate missing data exploration, visualization and assessment of imputations2018Tierney & CookarXivvisdat
Phosphoproteomic-based kinase profiling early in influenza virus infection identifies GRK2 as antiviral drug target2018Yángüez et al.Nature Communicationsrentrez
Biodiversity hotspots are not congruent with conservation areas in the Gulf of California2018Morzaria-Luna et al.Biodiversity and Conservationtaxize
Implications of Simulating Global Digital Elevation Models for Flood Inundation Studies2018Hawker et al.Water Resources Researchosmdata
Habitat suitability estimated by niche models is largely unrelated to species abundance2018Dallas & HastingsGlobal Ecology and Biogeographyrgbif, scrubr
Text Mining and Big Data Analysis in the Relational Database with R2018Gye-SooInternational Journal of Trend in Research and Developmenttokenizers
Maternal Testosterone and Offspring Sex-Ratio in Birds and Mammals: A Meta-Analysis2017Merkling et al.Evolutionary Biologyrotl
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Identifying historic river ice breakup timing using MODIS and Google Earth Engine in support of operational flood monitoring in Northern Ontario2019Beaton et al.Remote Sensing of Environmenttidyhydat
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A machine learning framework for automated analysis of central bank communication and media discourse. The case of Narodowy Bank Polski2019RybinskiBank & CreditRSelenium
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Modelling Function-Valued Processes with Nonseparable Covariance Structure2019Konzen et al.arXivweathercan
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Robustness Spatiotemporal Clustering and Trend Detection of Rainfall Erosivity Density in Greece2019Vantas et al.Waterhydroscoper
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Linking Biodiversity Data Using Evolutionary History2019McTavishBiodiversity Information Science and Standardsrotl
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A Computational Analysis of Natural Languages to Build a Sentence Structure Aware Artificial Neural Network2019CalderonearXivtokenizers
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Explainable statistical learning in public health for policy development: the case of real-world suicide data2019Van Schaik et al.BMC medical research methodologyfingertipsR
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Discovery and Validation of Urinary Molecular Signature of Early Sepsis2020Bandyopadhyay et al.Critical Care Explorationsrentrez
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Hastichthys totonacus sp. nov., a North American Turonian dercetid fish (Teleostei, Aulopiformes) from the Huehuetla quarry, Puebla, Mexico2021Alvarado-Ortega & Díaz-CruzJournal of South American Earth Sciencesphylogram, treeio
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Quantifying Plasmodium falciparum infections clustering within households to inform household-based intervention strategies for malaria control programs: An observational study and meta-analysis from 41 malaria-endemic countries2020Stresman et al.PLOS Medicinerdhs, rnaturalearth
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Analyzing long-term impacts of ungulate herbivory on forest-recruitment dynamics at community and species level contrasting tree densities versus maximum heights2020Nopp-Mayr et al.Scientific Reportsskimr
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Evaluating the quality of OSM roads and buildings in the Québec Province2020Moradiosmdata
The transboundary nature of the world’s exploited marine species2020Palacios-Abrantes et al.Scientific Reportsrfishbase
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Lead DEAD/H box helicase biomarkers with the therapeutic potential identified by integrated bioinformatic approaches in lung cancer2021Cui et al.Computational and Structural Biotechnology JournalUCSCXenaTools
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Delineating reef fish trophic guilds with global gut content data synthesis and phylogeny2020Parravicini et al.PLOS Biologyrfishbase
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Cluster Analysis of Regional Research and Development Disparities in Europe2020Ionela-Andreea & MarianStudies in Business and Economicsrnaturalearth
Global surveillance of potential antiviral drug resistance in SARS-CoV-2: proof of concept focussing on the RNA-dependent RNA polymerase2021Mari et al.Cold Spring Harbor Laboratoryrnaturalearth
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Predicting the current and future distribution of the western black-legged tick, Ixodes pacificus, across the Western US using citizen science collections2021Porter et al.PLOS ONEFedData
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The traded water footprint of global energy from 2010 to 20182021Chini & PeerScientific Datacomtradr
Safety concerns of recycling postconsumer polyolefins for food contact uses: Regarding (semi-)volatile migrants untargetedly screened2021Su et al.Resources, Conservation and Recyclingwebchem
Tracing total and dissolved material in a western Canadian basin using quality control samples to guide the selection of fingerprinting parameters for modelling2021Laceby et al.CATENAtidyhydat
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Crowdsourcing snake identification with online communities of professional herpetologists and avocational snake enthusiasts2021Durso et al.Royal Society Open Sciencetaxize
Understanding human adaptation to drought: agent-based agricultural water demand modeling in the Bow River Basin, Canada2021Ghoreishi et al.Hydrological Sciences Journalnlrx
Projected shifts in loggerhead sea turtle thermal habitat in the Northwest Atlantic Ocean due to climate change2021Patel et al.Scientific Reportsrerddap
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Evaluation of the MOD11A2 product for canopy temperature monitoring in the Brazilian Atlantic Forest2021De Andrade et al.Environmental Monitoring and AssessmentMODIStsp
Distribution of Five Aquatic Plants Native to South America and Invasive Elsewhere under Current Climate2021LozanoEcologiesspocc
Meta‐analysis shows the evidence for context‐dependent mating behaviour is inconsistent or weak across animals2021DoughertyEcology Lettersrotl
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Protected Area Networks Do Not Represent Unseen Diversity2021Delso et al.Research SquareCoordinateCleaner
Open source tools for geographic analysis in transport planning2021LovelaceJournal of Geographical Systemsstplanr, opentripplanner
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Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles2021Andreu-Sánchez et al.GigaSciencerotl
Bird habitat preferences drive hemoparasite infection in the Neotropical region2021DELATORRE & CAMPIÃOIntegrative Zoologyrredlist
Analysing landscape effects on dispersal networks and gene flow with genetic graphs2021Savary et al.Molecular Ecology ResourcesNLMR
Genomic evidence of past and future climate-linked loss in a migratory Arctic fish2021Layton et al.Nature Climate Changeweathercan
The potential for expansion of irrigated rice under alternate wetting and drying in Burkina Faso2021Akpoti et al.Agricultural Water ManagementMODIStsp
Pleistocene climatic fluctuations promoted alternative evolutionary histories in Phytelephas aequatorialis, an endemic palm from western Ecuador2021Escobar et al.Journal of Biogeographyspocc, CoordinateCleaner
ORFik: a comprehensive R toolkit for the analysis of translation2021Tjeldnes et al.Cold Spring Harbor Laboratorybiomartr
Past and future potential range changes in one of the last large vertebrates of the Australian continent, the emu Dromaius novaehollandiae2021Ryeland et al.Scientific ReportsCoordinateCleaner
Transformation of &lt;i&gt;n&lt;/i&gt;-alkanes from plant to soil: a review2021Thomas et al.Copernicus GmbHrnaturalearth
The Early Branching Group of Orbiniida Sensu Struck et al., 2015: Parergodrilidae and Orbiniidae2021Meca et al.Diversityrnaturalearth
rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families2021Sellés Vidal et al.PLOS ONEtreeio, magick
Satellite DNA in Neotropical Deer Species2021Vozdova et al.Genestreeio
Completeness of open access FluNet influenza surveillance data for Pan-America in 2005–20192021Simpson et al.Scientific ReportsRSelenium
Fabaceae (legume) pollen as an anthropogenic indicator in eastern North America2021Teale & ChangVegetation History and Archaeobotanyneotoma
Modelling the global burden of drug-resistant tuberculosis avertable by a post-exposure vaccine2021Fu et al.Nature Communicationsrdhs
Universal principles underlying segmental structures in parrot song and human speech2021Mann et al.Scientific Reportsmagick
Successful breeding predicts divorce in plovers2020Halimubieke et al.Scientific Reportsrnoaa
A Bayesian approach for fitting and comparing demographic growth models of radiocarbon dates: A case study on the Jomon-Yayoi transition in Kyushu (Japan2021Crema & ShodaPLOS ONEc14bazAAR
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass2021Lovell et al.Naturernaturalearth
Would you please like my tweet?! An artificially intelligent, generative probabilistic, and econometric based system design for popularity-driven tweet content generation2021Garvey et al.Decision Support Systemshunspell
Age, Origin, and Biogeography: Unveiling the Factors Behind the Diversification of Dung Beetles2021Schwery & O’MearaCold Spring Harbor Laboratoryrgbif, taxize
Examining the utility of DNA barcodes for the identification of tallgrass prairie flora2021Herzog & LatvisApplications in Plant Sciencestaxize