rOpenSci | Using drake to power a new soil respiration database
Reported on: May 4, 2019

Using drake to power a new soil respiration database

English • By Ben Bond Lamberty • Featuring: drake

Package or resource used*

drake

URL or code snippet for your use case*

https://github.com/bpbond/cosore/blob/6b96bf9afbc3cb8e995c4b1e65b7c6af78bdc82f/README.md

Image

26%20PM|346x499

Sector

Academic

Field(s) of application

Earth sciences, climate change, ecology

What did you do?

Earth system scientists increasingly use online data repositories to store, synthesize, and perform meta-analyses of e.g. forest growth, plant characteristics, and land-atmosphere energy fluxes (see for example Ameriflux). No such database exists for continuous soil respiration, the land-to-atmosphere CO2 flux measured continuously by automated systems around the world, however. This is the gap my nascent cosore package aims to fill. drake provides the infrastructure for tracking out-of-date soil respiration datasets contributed by authors; efficiently rebuilding them into a single, standardized form; and verifying reproducibility.